Software
The Whitford Group develops and maintains the following open-source tools for biomolecular simulations and analysis.
RADtool
RADtool is a plugin for VMD that allows for the rapid analysis of ribosome structures and trajectories.
OpenSMOG
OpenSMOG is a set of Python libraries that allow SMOG models to easily be deployed using OpenMM.
SMOG 2
SMOG 2 is a downloadable package that can be used to generate and customize Structure-Based models for biomolecules. This is the most widely-used SBM generation tool in the field.
SMOG-SERVER
This is our central online resource for support for Structure-Based Models (SBMs). The first version we released was in the form of an online webtool, hence the name.