Software

The Whitford Group develops and maintains the following open-source tools for biomolecular simulations and analysis.

RADtool

RADtool

RADtool is a plugin for VMD that allows for the rapid analysis of ribosome structures and trajectories.

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OpenSMOG

OpenSMOG is a set of Python libraries that allow SMOG models to easily be deployed using OpenMM.

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SMOG 2

SMOG 2

SMOG 2 is a downloadable package that can be used to generate and customize Structure-Based models for biomolecules. This is the most widely-used SBM generation tool in the field.

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SMOG-SERVER

SMOG-SERVER

This is our central online resource for support for Structure-Based Models (SBMs). The first version we released was in the form of an online webtool, hence the name.

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